1. The Scott Effect
CNO Tom Chandler is sent to Asia to investigate a possible mutation of the Red Flu. Captain Slattery and his crew deliver cure to Southeast Asia but there may be an unexpected threat in the region.
The Last Ship — Season 3
The crew of the Nathan James is shifting their attention to Asia after President Michener hears rumblings that the Chinese leader has been hoarding the "Scott cure" instead of distributing it to the people in the region. Michener sends Chandler to a global summit to investigate this allegation, as well as rumors of a possible mutation of the original virus that has caused a fresh outbreak in Japan.
2. Rising Sun
Chandler must find a way to return to his old crew and investigate a dangerous new foe.
3. Shanzhai
Chandler and crew race to find answers in an Asian Dodge City. Slattery begins to unravel the truth about his troubling predicament.
4. Devil May Care
Chandler must confront his suspected new foe. Slattery learns more about the supposed virus mutation. Pressure mounts on President Michener as the situation worsens.
5. Minefield
Chandler's mission becomes complicated as his position is worsened. President Michener faces pressure from the regional leaders.
6. Dog Day
Chandler's mission comes to a head as he prepares the final part of his plan. President Michener ponders the fate of his presidency.
7. In the Dark
The USS Nathan James must evade an overwhelming threat. A revelation in St. Louis puts President Michener in a terrible position.
8. Sea Change
America copes with tragedy while Chandler further investigates the possible virus mutation.
9. Paradise
Chandler gets a lead that could help answer threatening questions. Kara does some digging in the White House.
10. Scuttle
Chandler finds himself making a difficult decision when an order comes in from the White House.
11. Legacy
Chandler faces his powerful enemy in a final showdown. Kara joins someone that can help with her mission.
12. Resistance
Chandler returns to America to find out what has really been happening.
13. Don't Look Back
The fight for America reaches its conclusion. Chandler faces a challenge that could change his life forever.